Function reference • MAR1

Main function

Main fitting function.

run.mar(): Initiate MAR analysis

ss.mar1(): Fit a state-space MAR model using the MARSS package.

prepare.data(): Prepare data frame for MAR analysis

MAR1-package MAR1: Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data

Plotting

plot(<MAR>): Plot coefficients of a MAR model

plot(<MARtop>): Plot coefficients of top MAR models

hist(<MARtop>): Plot histogram of AIC values of top MAR models

Printing and Summarizing

print(<MAR>): Print output of a MAR model

print(<MARsummary>): Print the summary of a MAR model

summary(<MAR>): Produce a summary of a MAR model

export.MAR(): Export all elements of a MAR object to a new directory

Data

L4.AllDates: L4 plankton abundance time-series

L4.mar: L4 plankton abundance time-series prepared for MAR modeling

Helper functions

Helper functions for users.

is.diagonal(): Test if matrix is diagonal